There is evidence of the first Jews settling in Kyrgyzstan about a thousand years ago, but the Jewish community began forming in the second half of the 19th century as Central Asia was annexed by the Russian Empire, and both European and Bukharian Jews came to settle on the territory of today’s Kyrgyzstan. Ashkenazi Jews preferred the northern part of the republic, while Sephardic Jews settled in the south. In the 20th century the Bukharian Jews began migrating gradually to the northern regions.
The number of Ashkenazi Jews grew in the 1930-1940's, primarily with exiles and refugees. The number of evacuated Jews during the Great Patriotic War is estimated at 26,000. By the end of the 1970's, the Jewish population of Kyrgyzstan had shrunk to 7,200. Along with European and Bukharian Jews, small groups of Karaites, Krymchaks, and Caucasus Jews lived in Kyrgyzstan, all suffering to some extent from Stalinist repression.
After the Jewish organizations were eliminated and most local Bukharian-Jewish intellectuals destroyed in the 1920–1930's, the only remaining institutional setting of the Jewish community was the synagogue in Bishkek, established in 1941.
Over 5,000 have emigrated from the country since the early 1990’s.